منابع مشابه
SED-ML web tools: generate, modify and export standard-compliant simulation studies
Summary The Simulation Experiment Description Markup Language (SED-ML) is a standardized format for exchanging simulation studies independently of software tools. We present the SED-ML Web Tools, an online application for creating, editing, simulating and validating SED-ML documents. The Web Tools implement all current SED-ML specifications and, thus, support complex modifications and co-simula...
متن کاملSED-ED, a workflow editor for computational biology experiments written in SED-ML
UNLABELLED The simulation experiment description markup language (SED-ML) is a new community data standard to encode computational biology experiments in a computer-readable XML format. Its widespread adoption will require the development of software support to work with SED-ML files. Here, we describe a software tool, SED-ED, to view, edit, validate and annotate SED-ML documents while shieldin...
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Compile-time reeective ML (CRML) is an extension to Standard ML providing a metalanguage for program manipulationn10]. The original motivation was the automatic generation of map and fold like combinators for arbitrary datatypess4, 9]. The mechanisms developed to achieve this are far more general than we at rst realized, providing the foundation for a rich class of language extensions expressed...
متن کاملSimulation Experiment Description Markup Language (SED-ML) Level 1 Version 2
The number, size and complexity of computational models of biological systems are growing at an ever increasing pace. It is imperative to build on existing studies by reusing and adapting existing models and parts thereof. The description of the structure of models is not sufficient to enable the reproduction of simulation results. One also needs to describe the procedures the models are subjec...
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SUMMARY Gene duplication and loss are important processes in the evolution of gene families. Moreover, growth of families by duplication and retention is an important mechanism by which organisms gain new functions. Therefore the ability to infer the evolutionary histories of families is an important step in understanding the evolution of function. We have recently developed DupliPHY, a softwar...
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ژورنال
عنوان ژورنال: Nature Precedings
سال: 2011
ISSN: 1756-0357
DOI: 10.1038/npre.2011.6328